lisc.plts.counts.plot_matrix

lisc.plts.counts.plot_matrix(data, x_labels=None, y_labels=None, attribute='score', transpose=False, cmap='purple', square=False, ax=None, **kwargs)

Plot a matrix as a heatmap.

Parameters

dataCounts or 2d array

Data to plot in matrix format.

x_labelslist of str, optional

Labels for the x-axis.

y_labelslist of str, optional

Labels for the y-axis.

attribute{‘score’, ‘counts’}, optional

Which data attribute from the counts object to plot the data for. Only used if the data input is a Counts object.

transposebool, optional, default: False

Whether to transpose the data before plotting.

cmap{‘purple’, ‘blue’} or matplotlib.cmap

Colormap to use for the plot. If string, uses a sequential palette of the specified color.

squarebool

Whether to plot all the cells as equally sized squares.

axmatplotlib.Axes, optional

Figure axes upon which to plot.

**kwargs

Additional keyword arguments to pass through to seaborn.heatmap.

Notes

This function is a wrapper of the seaborn heatmap plot function.

Examples

See the example for the compute_score() method of the Counts class.

Examples using lisc.plts.counts.plot_matrix

Tutorial 04: Counts Analysis

Tutorial 04: Counts Analysis